PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn240861
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family LBD
Protein Properties Length: 169aa    MW: 18436.7 Da    PI: 4.7298
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn240861genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26023.61.5e-073593297
      DUF260 32 nvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97
                +v+k+FG++ ++++l+a+p+++r+         A+ r+ + v+Gavg+++++++q++++++e++l+
  Achn240861  3 FVAKFFGRAGLVSFLSAVPDSQRP---------ACGRTVNAVSGAVGLLWTGNWQICETAVETVLR 59
                799********************8.........899************************998765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031957.0E-5357IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MLFVAKFFGR AGLVSFLSAV PDSQRPACGR TVNAVSGAVG LLWTGNWQIC ETAVETVLRG  60
DVFRPIPTFS VESAAEEFDD ASETNNIHFL GSLDLRSDRA NDFRELTARA ESAADLDLCL  120
TAGGRGIRRQ EETPSMDPEE SKPTTFESGL TYRRSLQGRS EAKLLRLF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016539448.12e-49PREDICTED: LOB domain-containing protein 37-like
SwissprotQ9FN117e-33LBD37_ARATH; LOB domain-containing protein 37
TrEMBLK4B2T61e-47K4B2T6_SOLLC; Uncharacterized protein
TrEMBLM1CF439e-48M1CF43_SOLTU; Uncharacterized protein
STRINGSolyc01g107190.2.13e-47(Solanum lycopersicum)
STRINGPGSC0003DMT4000661652e-47(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.11e-32LOB domain-containing protein 37